PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Aradu.WS4QW
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Dalbergieae; Arachis
Family bHLH
Protein Properties Length: 553aa    MW: 60176.8 Da    PI: 5.5877
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Aradu.WS4QWgenomeNCGR_PGCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH39.51e-12404450455
                  HHHHHHHHHHHHHHHHHHHHHCTSCC.C...TTS-STCHHHHHHHHHHHHHHH CS
          HLH   4 ahnerErrRRdriNsafeeLrellPk.askapskKlsKaeiLekAveYIksLq 55 
                  +h e+Er+RR+++N++f  Lr ++P+ +      K++Ka+ L  A+ YI +Lq
  Aradu.WS4QW 404 NHVEAERQRREKLNQRFYALRAVVPNiS------KMDKASLLGDAITYITDLQ 450
                  799***********************66......*****************99 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF142152.4E-4190276IPR025610Transcription factor MYC/MYB N-terminal
PROSITE profilePS5088816.831400449IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000832.27E-14403454No hitNo description
SuperFamilySSF474594.58E-18403465IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000103.3E-10404450IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.109.2E-18404463IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003536.2E-14406455IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 553 aa     Download sequence    Send to blast
RSEVFSNLIN LFSSMFKLLL PHQIPKTLQE LLLLEKIMSE KFCVSDEDKG VLESVLGAEA  60
VAYFVSAVSN NFFSSVVASA SALAGTDAGL RRRLCQVLEG SKWNYAVFWQ VAGLKSGGSA  120
LIWGDGQCCD PKGGGAGEGG SEGDWSGVSK GDEEELRKKV LQKLDAYFAC SVSKEANYAR  180
LDRVSDLHMF YLASMYYIFG FDSPCGPGCS FKSGKSIWVS DSASCSNQLE SRSFLGRSAG  240
LQTVVFVPLK AGVVELGSVE TVPEDQGVLD LVRTAFGESS SGQAKAFPKI FGRELSVGGG  300
DAKSQSITIS FSPKLEDDSG FTSDSYEVQA LAANHGYGNP SNGSMGENSE AKLFPQMIGG  360
NYNAQTRVSS LDLGNEDSSS THLDERKPRK RGRKPANGRE EPLNHVEAER QRREKLNQRF  420
YALRAVVPNI SKMDKASLLG DAITYITDLQ MKIKVLETEK NMNNNNEPMF PFSDIDFQAR  480
EDDTAVVRVS CPLDLHPVSR VIKTFQEHQI MAPESGVSTS EGKMIHTFSI RAQGSEAAAI  540
QLKEKLEASL SKN
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4rqw_A3e-14902769192Transcription factor MYC3
4rqw_B3e-14902769192Transcription factor MYC3
4rs9_A3e-14902769192Transcription factor MYC3
4yz6_A3e-14902769192Transcription factor MYC3
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1385393RKPRKRGRK
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00099PBMTransfer from AT4G16430Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015948475.10.0PREDICTED: transcription factor bHLH3
TrEMBLA0A0S3SRS10.0A0A0S3SRS1_PHAAN; Uncharacterized protein
STRINGGLYMA13G18131.10.0(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF82633445
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G16430.11e-139bHLH family protein